PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g00034.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 106aa    MW: 11870.6 Da    PI: 8.5932
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g00034.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-06731526
                              --SGGGGTS...--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartG...tCkyGdrCkFaHg 26
                              +C+  a++G    C+y d+C+++H+
  Peaxi162Scf00016g00034.1  7 ICPVVAKSGkvsACSYSDKCRYSHD 31
                              589999999999************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.967233IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.6764671IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MKTPKHICPV VAKSGKVSAC SYSDKCRYSH DLEAFKAEKP ADLEGSCPFL VYEGPCPYGL  60
GCRFAGTHND DDVSAKTESL TRKSSELNFF NKDTQKLLWK NKMKFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768328.19e-59PREDICTED: tRNA-dihydrouridine(47) synthase
RefseqXP_016458480.11e-58PREDICTED: tRNA-dihydrouridine(47) synthase
SwissprotQ7XT072e-35DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A0V0IS445e-54A0A0V0IS44_SOLCH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGPGSC0003DMT4000041769e-53(Solanum tuberosum)